Donohoe · Cell metabolism 2011 · Controlled animal and cell culture experimental study · n=?

The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon.

Cited 1972 times in the scientific literature.

Level 5 - mechanism / opinion, no new human data

Preclinical animal model (germfree mice) and in vitro colonocyte mechanistic study

PubMed 21531334 · doi:10.1016/j.cmet.2011.02.018 · record verified 2026-08-30

What was done

Researchers evaluated tissue-specific energy homeostasis in mice and examined colonocytes from germfree mice versus controls. They analyzed the expression of intermediary metabolism enzymes (including the TCA cycle), NADH/NAD(+) ratios, oxidative phosphorylation, ATP levels, AMPK activation, p27(kip1) phosphorylation, and autophagy. They also tested whether supplying butyrate to germfree colonocytes restored mitochondrial respiration and suppressed autophagy, distinguishing its role as an energy substrate from histone deacetylase (HDAC) inhibition.

What was found

The abstract reports directional findings without numerical values. Colonocytes from germfree mice were in an energy-deprived state with decreased expression of intermediary metabolism enzymes, decreased NADH/NAD(+), reduced oxidative phosphorylation, and reduced ATP levels. This energy depletion triggered AMPK activation, p27(kip1) phosphorylation, and autophagy. Exogenous butyrate rescued mitochondrial respiration deficits and prevented autophagy by acting as an energy source rather than as an HDAC inhibitor.

Why it matters

This study demonstrates a tissue-specific metabolic dependency of host colonocytes on bacterial-derived butyrate for primary energy production and prevention of autophagy. It provides a direct mechanistic link between gut microbial metabolites and mammalian epithelial energy balance.

Limits

All experiments were conducted in mice and isolated colonocytes, limiting direct extrapolation to human colonic physiology. The abstract provides no specific sample sizes, effect sizes, variance estimates, or quantitative metrics.

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